Sadly I'm not able to find any notes about what specifically Jim Meko has issue with about these bars aside from music. I do think that the guys who own the two are pretty nice guys. When I lived at 11th and Howard, I had far more trouble with the (mostly straight) patrons of the 11th Street Corridor of nightclubs; the homeless encampments in front of the earthquake damaged and abandoned Catholic Church; and big clubs and restaurants doing Valet Parking.
Anyone know where the Hole in the Wall wants to move to? Or what Jim Meko's real agenda is?
UPDATE: Besides Jim Meko's response below, he's also written an expanded rebuttal here. Ah, aren't local politics fun?